Executables 
=============

Three sets of executables are built: "Main," "Profiling," and "Validation."  The former includes the programs used for performing actual analyses.  The latter contains small applications used to verify particular parts of Katydid.

Main Applications
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  * **Katydid** -- the main, general-purpose, analysis application.  
  * **EggScanner** -- prints the header that is extracted from an egg file.  
  * **RSAMatToEgg** -- converts one or more RSA Mat files into one egg file.  
  * **Truncate** -- truncates an egg2 file at a given file size.  Do NOT use this on egg3 or RSA Mat files!  

Profiling Applications
------------
These files can be used to profile various aspects of Katydid.  They are optionally built by setting the ``Katydid_ENABLE_PROFILING`` flag in CMake.

Validation Applications
--------------
There are a variety of validation applications that can be optionally built by setting the ``Katydid_ENABLE_TESTING`` flag in CMake.